Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)

View the Project on GitHub m2aia/m2aia


Build instructions

Installation dependencies

Docker (M²aia Online)

pyM2aia m2aia/mitk-docker

Docker (MITK extension) m2aia/mitk-docker


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Author: j.cordes@hs-mannheim.de

ImzML access using M²aia in Python

pyM²aia is a Python interface for mass spectrometry imaging with focus on Deep Learning utilizing M²aia’s I/O libraries.

Package installation

Consider to install pyM²aia in an virtual environment.

# cd projectDir/
python3 -m venv .venv
pip3 install --upgrade pip

source .venv/bin/activate

pip install m2aia

Getting started

Examples repository: