ImzML access using M²aia in Python

pyM²aia is a Python interface for mass spectrometry imaging with focus on Deep Learning utilizing M²aia’s I/O libraries.

github.com/m2aia/pym2aia

Package installation

Consider to install pyM²aia in an virtual environment.

python3 -m venv .venv
source .venv/bin/activate

pip install m2aia

Getting started

Examples repository:

• ImzML Meta-data access
• Signal processing
• Ion image generation
• Spectral strategy - Peak Learning
• Spatial strategy - Unsupervised Ion-image clustering
• Spatio-spectral streategy: Autoencoder
• Spatio-spectral streategy: Pixel-wise classification

Documentation